If your 1st placed player was awarded 60 points, they should also have 60 points when you upload the tournament into Stats Genie (as far as I know - the Stats Genie forums would be a better place to ask). Make sure you are comparing the points the player actually received and not just the points that were awarded with the 1st place prize.
Also, make sure you aren't confusing points with score. On the Stats tab, Score is a computed number that is relative to other players, and has nothing at all to do with points the player has been awarded.