yes your money will be counted... In the program (and in casinos and cardrooms) its called a rake... What you will wanna do is create a league that all your players will be a part of, and create a season. A season can be called Year 1, or Season 1, or 2008 Season, or whatever. A league would be the name of your club. On the Game tab you would say its a $20 buyin fee and the rake would be $10. After you get a couple games in (**important** every tournament game has to have the league and season entered in on the game tab for this to work properly), you can go to the stats tab and filter in your league and season title, refresh touranments, and you will have the standings for that season of that league. You can choose more than the stats that are on default. By default there should be a rake category so you can see how much each individual contributed to the rake and you will see a rake total as well
If you need me to break this down a bit more, just lemme know... but you should be able to fiddle around and figure most of it out =)